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Wstępna charakterystyka bakteriofaga Serratia φOS10/Bibliografia

< Wstępna charakterystyka bakteriofaga Serratia φOS10
  1. Abdollahi, A., Nasirpour, S., Shahmohammad, N., & Zolfaghari, A. (2008). Serratia Marcescens, an Opportunistic Gram Negative Infection in Cardiac Valve Surgery. Iranian Journal of Pathology, 3(1), 40-42.

  2. Abedon, S. T., Herschler, T. D., & Stopar, D. (2001). Bacteriophage latent-period evolution as a response to resource availability. Appl. Environ. Microbiol., 67(9), 4233-4241.

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  6. Ashelford, K. E., Fry, J. C., Bailey, M. J., & Day, M. J. (2002). Characterization of Serratia isolates from soil, ecological implications and transfer of Serratia proteamaculans subsp. quinovora Grimont et al. 1983 to Serratia quinivorans corrig., sp. nov. International journal of systematic and evolutionary microbiology, 52(6), 2281-2289.

  7. Aziz, R. K., Bartels, D., Best, A. A., DeJongh, M., Disz, T., Edwards, R. A., ... & Meyer, F. (2008). The RAST Server: rapid annotations using subsystems technology. BMC genomics, 9(1), 75.

  8. Baj, J., Dziewit, Ł., Bartosik, D., Radlińska, M., Drewniak, Ł., Paterczyk, B. (2018). Mikrobiologia. Wydawnictwo naukowe PWN.

  9. Baron, S. (1996). Classification--Medical Microbiology. University of Texas Medical Branch at Galveston.

  10. Barry, M., Van Buuren, N., Burles, K., Mottet, K., Wang, Q., & Teale, A. (2010). Poxvirus exploitation of the ubiquitin-proteasome system. Viruses, 2(10), 2356-2380.

  11. Barylski, J., Enault, F., Dutilh, B. E., Schuller, M. B., Edwards, R. A., Gillis, A., ... & Lavigne, R. (2018). Taxonomy proposal: To create one (1) new family, Herelleviridae, in the order Caudovirales. ICTV Online: International Committee on Taxonomy of Viruses (ICTV).

  12. Bender, K. S., Buckley, D. H., Sattley, W. M., Madigan, M. T., & Stahl, D. A. (2018). Brock Biology of Microorganisms. Pearson.

  13. Benedik, M. J., & Strych, U. (1998). Serratia marcescens and its extracellular nuclease. FEMS microbiology letters, 165(1), 1-13.

  14. Bergan, T., Grimont, P. A., & Grimont, F. (1983). Fatty acids of Serratia determined by gas chromatography. Current Microbiology, 8(1), 7-11.

  15. Bernstein, H., & Bernstein, C. (1973). Circular and branched circular concatenates as possible intermediates in bacteriophage T4 DNA replication. Journal of molecular biology, 77(3), 355-361.

  16. Bhadra, B., Roy, P., & Chakraborty, R. (2005). Serratia ureilytica sp. nov., a novel urea-utilizing species. International journal of systematic and evolutionary microbiology, 55(5), 2155-2158.

  17. Bielmann, R., Habann, M., Eugster, M. R., Lurz, R., Calendar, R., Klumpp, J., & Loessner, M. J. (2015). Receptor binding proteins of Listeria monocytogenes bacteriophages A118 and P35 recognize serovarspecific teichoic acids. Virology, 477, 110-118.

  18. Blum, J. S., Bindi, A. B., Buzzelli, J., Stolz, J. F., & Oremland, R. S. (1998). Bacillus arsenicoselenatis, sp. nov., and Bacillus selenitireducens, sp. nov.: two haloalkaliphiles from Mono Lake, California that respire oxyanions of selenium and arsenic. Archives of microbiology, 171(1), 19-30.

  19. Bobay, L. M., Touchon, M., & Rocha, E. P. (2014). Pervasive domestication of defective prophages by bacteria. Proceedings of the National Academy of Sciences, 111(33), 12127-12132.

  20. Bollivar, D. W., Bernardoni, B., Bockman, M. R., Miller, B. M., Russell, D. A., Delesalle, V. A., ... & Eppurath, A. (2016). Complete genome sequences of five bacteriophages that infect Rhodobacter capsulatus. Genome Announc., 4(3), e00051-16.

  21. Breed, R. S., Murray, E. G., & Kitchens, A. P. (1948). Sergey's manual of determinative bacteriology. Sergey's manual of determinative bacteriology. Sixth edition.

  22. Brettin, T., Davis, J. J., Disz, T., Edwards, R. A., Gerdes, S., Olsen, G. J., ... & Shukla, M. (2015). RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Scientific reports, 5, 8365.

  23. Brissette, J. L., Weiner, L., Ripmaster, T. L., & Model, P. (1991). Characterization and sequence of the Escherichia coli stress-induced psp operon. Journal of molecular biology, 220(1), 35-48.

  24. Brüssow, H., Canchaya, C., & Hardt, W. D. (2004). Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol. Mol. Biol. Rev., 68(3), 560-602.

  25. Bujnicki, J. M., Feder, M., Radlińska, M., & Blumenthal, R. M. (2002). Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA: m6A methyltransferase. Journal of molecular evolution, 55(4), 431-444.

  26. Cases, S., Smith, S. J., Zheng, Y. W., Myers, H. M., Lear, S. R., Sande, E., ... & Erickson, S. K. (1998). Identification of a gene encoding an acyl CoA: diacylglycerol acyltransferase, a key enzyme in triacylglycerol synthesis. Proceedings of the National Academy of Sciences, 95(22), 13018-13023.

  27. Casey, E., Fitzgerald, B., Mahony, J., Lugli, G. A., Ventura, M., & van Sinderen, D. (2017). Genome sequence of Serratia marcescens phage BF. Genome Announc., 5(23), e00211-17.

  28. Casjens, S. (2003). Prophages and bacterial genomics: what have we learned so far?. Molecular microbiology, 49(2), 277-300.

  29. Casjens, S. R., Gilcrease, E. B., Winn-Stapley, D. A., Schicklmaier, P., Schmieger, H., Pedulla, M. L., ... & Hendrix, R. W. (2005). The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy. Journal of bacteriology, 187(3), 1091-1104.

  30. Casjens, S., & Hayden, M. (1988). Analysis in vivo of the bacteriophage P22 headful nuclease. Journal of molecular biology, 199(3), 467-474.

  31. Cenens, W., Makumi, A., Mebrhatu, M. T., Lavigne, R., & Aertsen, A. (2013). Phage–host interactions during pseudolysogeny: Lessons from the Pid/dgo interaction. Bacteriophage, 3(1), e1003269.

  32. Cerritelli, M. E., Conway, J. F., Cheng, N., Trus, B. L., & Steven, A. C. (2003). Molecular mechanisms in bacteriophage T7 procapsid assembly, maturation, and DNA containment. Advances in protein chemistry, 64, 301-324.

  33. Chandrakanth, K., Virupakshaiah, D. B. M., Gavimath, C. C., Udaykumar, M., & Kangralkar, V. A. (2010). Comparative genomics of Staphylococcus aureus Coagulase gene. Journal of Advanced Bioinformatics Applications and Research, 1(1), 31-36.

  34. Chang, C. Y., Kemp, P., & Molineux, I. J. (2010). Gp15 and gp16 cooperate in translocating bacteriophage T7 DNA into the infected cell. Virology, 398(2), 176-186.

  35. Charbit, A., Clement, J. M., & Hofnung, M. (1984). Further sequence analysis of the phage lambda receptor site: possible implications for the organization of the LamB protein in Escherichia coli K12. Journal of molecular biology, 175(3), 395-401.

  36. Blum, J. S., Bindi, A. B., Buzzelli, J., Stolz, J. F., & Oremland, R. S. (1998). Bacillus arsenicoselenatis, sp. nov., and Bacillus selenitireducens, sp. nov.: two haloalkaliphiles from Mono Lake, California that respire oxyanions of selenium and arsenic. Archives of microbiology, 171(1), 19-30.

  37. Bobay, L. M., Touchon, M., & Rocha, E. P. (2014). Pervasive domestication of defective prophages by bacteria. Proceedings of the National Academy of Sciences, 111(33), 12127-12132.

  38. Bollivar, D. W., Bernardoni, B., Bockman, M. R., Miller, B. M., Russell, D. A., Delesalle, V. A., ... & Eppurath, A. (2016). Complete genome sequences of five bacteriophages that infect Rhodobacter capsulatus. Genome Announc., 4(3), e00051-16.

  39. Breed, R. S., Murray, E. G., & Kitchens, A. P. (1948). Sergey's manual of determinative bacteriology. Sergey's manual of determinative bacteriology. Sixth edition.

  40. Brettin, T., Davis, J. J., Disz, T., Edwards, R. A., Gerdes, S., Olsen, G. J., ... & Shukla, M. (2015). RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Scientific reports, 5, 8365.

  41. Brissette, J. L., Weiner, L., Ripmaster, T. L., & Model, P. (1991). Characterization and sequence of the Escherichia coli stress-induced psp operon. Journal of molecular biology, 220(1), 35-48.

  42. Brüssow, H., Canchaya, C., & Hardt, W. D. (2004). Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol. Mol. Biol. Rev., 68(3), 560-602.

  43. Bujnicki, J. M., Feder, M., Radlińska, M., & Blumenthal, R. M. (2002). Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA: m6A methyltransferase. Journal of molecular evolution, 55(4), 431-444.

  44. Cases, S., Smith, S. J., Zheng, Y. W., Myers, H. M., Lear, S. R., Sande, E., ... & Erickson, S. K. (1998). Identification of a gene encoding an acyl CoA: diacylglycerol acyltransferase, a key enzyme in triacylglycerol synthesis. Proceedings of the National Academy of Sciences, 95(22), 13018-13023.

  45. Casey, E., Fitzgerald, B., Mahony, J., Lugli, G. A., Ventura, M., & van Sinderen, D. (2017). Genome sequence of Serratia marcescens phage BF. Genome Announc., 5(23), e00211-17.

  46. Casjens, S. (2003). Prophages and bacterial genomics: what have we learned so far?. Molecular microbiology, 49(2), 277-300.

  47. Casjens, S. R., Gilcrease, E. B., Winn-Stapley, D. A., Schicklmaier, P., Schmieger, H., Pedulla, M. L., ... & Hendrix, R. W. (2005). The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy. Journal of bacteriology, 187(3), 1091-1104.

  48. Casjens, S., & Hayden, M. (1988). Analysis in vivo of the bacteriophage P22 headful nuclease. Journal of molecular biology, 199(3), 467-474.

  49. Cenens, W., Makumi, A., Mebrhatu, M. T., Lavigne, R., & Aertsen, A. (2013). Phage–host interactions during pseudolysogeny: Lessons from the Pid/dgo interaction. Bacteriophage, 3(1), e1003269.

  50. Cerritelli, M. E., Conway, J. F., Cheng, N., Trus, B. L., & Steven, A. C. (2003). Molecular mechanisms in bacteriophage T7 procapsid assembly, maturation, and DNA containment. Advances in protein chemistry, 64, 301-324.

  51. Chandrakanth, K., Virupakshaiah, D. B. M., Gavimath, C. C., Udaykumar, M., & Kangralkar, V. A. (2010). Comparative genomics of Staphylococcus aureus Coagulase gene. Journal of Advanced Bioinformatics Applications and Research, 1(1), 31-36.

  52. Chang, C. Y., Kemp, P., & Molineux, I. J. (2010). Gp15 and gp16 cooperate in translocating bacteriophage T7 DNA into the infected cell. Virology, 398(2), 176-186.

  53. Charbit, A., Clement, J. M., & Hofnung, M. (1984). Further sequence analysis of the phage lambda receptor site: possible implications for the organization of the LamB protein in Escherichia coli K12. Journal of molecular biology, 175(3), 395-401.

  54. CŁAPA, T., NAROŻNA, D., SIUDA, R., Borkowski, A., Selwet, M., MĄDRZAK, C. J., & KOŹLECKA, E. (2017). Bacterial communities from the arsenic mine in Złoty Stok, Sudety mountains, Poland. Polish journal of microbiology, 66(3), 375-381.

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